Download and browse decoys

If you're doing this for the first time, I recommend reading the main document. If you just want to browse through the directory tree of the database and view all the files within it (such as the different NOTES files), click here.

Download the entire decoy set as a single tar and gzipped file.


Multiple decoy sets

Name of set Number of proteins Average number of decoys per set (~) Reference
4state_reduced 7 665 [Park & Levitt, 1996]
fisa 6 1432 [Simons et al, 1997]
fisa_casp3 6 1432 [Simons et al, 1997]
hg_structal 29 29 [Samudrala et al, 1998c]
ig_structal 61 60 [Samudrala et al, 1998c]
ig_structal_hires 20 19 [Samudrala et al, 1998c]
lattice_ssfit 8 2000 [Samudrala et al, 1999,Xia et al, 2000]
lmds 11 439 [Keasar & Levitt, 1999]
semfold 6 12900 [Samudrala & Levitt, 2002]
vhp_mcmd 1 6255 [Fogolari et al, 2005]


Single decoy sets

Name of set Number of proteins/decoys Reference
misfold 26 [Holm & Sander, 1992]
pdb_error 3 [Branden & Jones, 1990]


Loop decoy sets

Name of set Number of sets Average number of loops per set (~) Reference
abm_database 4 200 [Samudrala & Moult, 1998b]


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